Instructions  Instructions Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. To center on a location, click the ruler. Use the Scroll/Zoom buttons to change magnification and position. Examples: Chr20, Chr9:660,000..760,000, SNP:rs6870660, NM_153254, BRCA2, 5q31, ENm010.
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Landmark or Region:
Data Source INMEGEN - Guanajuato, Mexico and HapMap Data Rel_19/phaseII Oct05, on NCBI B34 assembly, dbSNP b124 INMEGEN - Guerrero, Mexico and HapMap Data Rel_19/phaseII Oct05, on NCBI B34 assembly, dbSNP b124 INMEGEN - Sonora, Mexico and HapMap Data Rel_19/phaseII Oct05, on NCBI B34 assembly, dbSNP b124 INMEGEN - Veracruz, Mexico and HapMap Data Rel_19/phaseII Oct05, on NCBI B34 assembly, dbSNP b124 INMEGEN - Yucatan, Mexico and HapMap Data Rel_19/phaseII Oct05, on NCBI B34 assembly, dbSNP b124 INMEGEN - Zacatecas, Mexico and HapMap Data Rel_19/phaseII Oct05, on NCBI B34 assembly, dbSNP b124 INMEGEN, Mexico and HapMap Data Rel_19/phaseII Oct05, on NCBI B34 assembly, dbSNP b124 INMEGEN, Mexico and HapMap Data Rel_19/phaseII Oct05, on NCBI B34 assembly, dbSNP b124	Scroll/Zoom:    Show 5 Mbp Show 2 Mbp Show 1 Mbp Show 750 kbp Show 500 kbp Show 200 kbp Show 100 kbp Show 100 kbp Show 40 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1 kbp Show 500 bp Show 100 bp    Flip

Population descriptors:YRI: Yoruba in Ibadan, Nigeria, JPT: Japanese in Tokyo, Japan, CHB: Han Chinese in Beijing, China, CEU: CEPH (Utah residents with ancestry from northern and western Europe), MEX: Mexican mestizos from across the country, GRO: Mexican mestizos from Guerrero, GTO: Mexican mestizos from Guanajuato, SON: Mexican mestizos from Sonora, VER: Mexican mestizos from Veracruz, YUC: Mexican mestizos from Yucatan, ZAC: Mexican mestizos from Zacatecas

 Overview

 Overview

 Region

 Region

 Details

 Details

For performing in depth LD and Haplotype analysis of genotype data install Haploview in your local machine
Haploview (ver3.12) is now available for download.

 Tracks

 Tracks

 Overview

 Overview

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dbSNP SNPs/500Kb	gt'd SNPs/500Kb	Ideogram	SNP cov/500Kb
Genes/500Kb	Heteroz/500Kb	NT contigs

 Region

 Region

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dbSNP SNPs/20Kb

gt'd SNPs/20Kb

LocusLink genes

 DNA

 DNA

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3-frame translation (forward)	Contigs
3-frame translation (reverse)	DNA/GC Content

 Genes

 Genes

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Entrez genes

 Variation

 Variation

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(Int) Genotyped SNPs	dbSNP SNPs	Recombination hotspots	Sequence Tagged Sites
(Mex) Genotyped SNPs	Heterozygosity/5Kb	Recombination rate (cM/Mb)	SNP coverage/5Kb

 Display Settings

 Display Settings

Image Width 450 640 800 1024 1152 1280	Region Size (bp)	Key position Between Beneath Left Right	Track Name Table Alphabetic Varying
Highlight feature(s) (feature1 feature2...)	Highlight regions (region1:start..end region2:start..end)	Show grid